Miyakogusa Predicted Gene
- Lj1g3v3384600.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SZZ6_LOTJA |
137 |
63.7 |
76.1 |
(tr|I3SZZ6) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT4G38580.1 |
110 |
54.1 |
76.5 |
| Symbols: ATFP6, HIPP26, FP6 | farnesylated protein 6 | chr4:18034596-18035693 FORWARD LENGTH=153 |
| Medicago |
Medtr3g117890.1 |
127 |
64.3 |
81.6 |
| heavy metal transport/detoxification superfamily protein | HC | chr3:55191462-55190381 | 20130731 |
| Soybean |
Glyma04g00500.1 |
134 |
62.3 |
73.7 |
|
| LJGI |
gnl|LJGI|TC62378 |
155 |
81.6 |
81.6 |
similar to UniRef100_Q8LGG1 Cluster: Farnesylated protein; n=1; Arabidopsis thaliana|Rep: Farnesylated protein - Arabidopsis thaliana (Mouse-ear cress), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3384600.1 |
length: 184 aa. |
| IPR006121 |
Heavy metal-associated domain, HMA |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0030001 |
metal ion transport |
|
|
| Molecular Function |
GO:0046872 |
metal ion binding |
|
|
| HMMPfam |
PF00403 |
HMA |
3.3e-10 |
73-118 |
| ProfileScan |
PS50846 |
HMA_2 |
10.510 |
63-127 |
| superfamily |
SSF55008 |
HMA, |
1.2e-11 |
60-129 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.70.100 |
no description |
1.1e-12 |
62-127 |
| HMMPanther |
PTHR22814 |
COPPER |
4.6e-30 |
45-134 |
| HMMPanther |
PTHR22814:SF14 |
COPPER |
4.6e-30 |
45-134 |
| Seg |
seg |
seg |
NA |
15-35 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
161 |
183 |
- Wolf-PSORT
Lj1g3v3384600.1 cyto 5.5, extr 4, cyto_nucl 3.5, chlo 2, vacu 1, golg 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3384600.1 |
|