Miyakogusa Predicted Gene
- Lj1g3v3343940.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7J7U8_MEDTR |
558 |
79.6 |
87.6 |
(tr|G7J7U8) COBRA-like protein OS=Medicago truncatula GN=MTR_3g117690 PE=4 SV=1 |
| TAIR_pep |
AT5G60920.1 |
309 |
43.8 |
59.9 |
| Symbols: COB | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:24511466-24513932 REVERSE LENGTH=456 |
| Medicago |
Medtr3g117690.1 |
558 |
79.6 |
87.6 |
| COBRA-like protein 2 precursor | HC | chr3:55101541-55103878 | 20130731 |
| Soybean |
Glyma06g00810.1 |
539 |
79.4 |
88.5 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3343940.1 |
length: 357 aa. |
| IPR006918 |
Glycosyl-phosphatidyl inositol-anchored, plant |
| method |
AccNumber |
shortName |
E-value |
location |
| BlastProDom |
PD140986 |
Q9FWK1_ARATH_Q9FWK1; |
3e-21 |
1-127 |
| HMMPfam |
PF04833 |
COBRA |
4.7e-26 |
1-128 |
| no_ID |
|
| HMMPanther |
PTHR31673 |
FAMILY |
5.1e-109 |
1-357 |
| HMMPanther |
PTHR31673:SF0 |
SUBFAMILY |
5.1e-109 |
1-357 |
| Seg |
seg |
seg |
NA |
343-357 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
335 |
356 |
- Wolf-PSORT
Lj1g3v3343940.1 chlo 3, nucl 3, cyto 2, plas 2, golg 2, chlo_mito 2, golg_plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3343940.1 |
|