database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | K7KHD7_SOYBN | 751 | 68.0 | 73.4 | (tr|K7KHD7) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
TAIR_pep | AT1G08540.1 | 548 | 71.9 | 82.5 | | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | RNApolymerase sigma subunit 2 | chr1:2703461-2706696 FORWARD LENGTH=572 |
Medicago | Medtr3g118290.1 | 644 | 74.5 | 81.2 | | RNA polymerase sigma factor | HC | chr3:55377817-55374030 | 20130731 |
Soybean | Glyma04g00330.1 | 651 | 78.1 | 83.5 | |
LJGI | gnl|LJGI|TC67503 | 1215 | 100.0 | 100.0 | homologue to UniRef100_A7PSL8 Cluster: Chromosome chr6 scaffold_28, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_28, whole genome shotgun sequence - Vitis vinifera (Grape), partial (86%) |
Lj1g3v3330190.1 | length: 565 aa. | |||
IPR000943 | RNA polymerase sigma-70 | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
Molecular Function | GO:0003677 | DNA binding | ||
Molecular Function | GO:0003700 | sequence-specific DNA binding transcription factor activity | ||
Biological Process | GO:0006352 | DNA-dependent transcription, initiation | ||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
Molecular Function | GO:0016987 | sigma factor activity | ||
FPrintScan | PR00046 | SIGMA70FCT | 3.3e-23 | 353-366 377-385 501-513 522-537 537-548 |
PatternScan | PS00716 | SIGMA70_2 | NA | 522-548 |
IPR007624 | RNA polymerase sigma-70 region 3 | |||
Molecular Function | GO:0003677 | DNA binding | ||
Molecular Function | GO:0003700 | sequence-specific DNA binding transcription factor activity | ||
Biological Process | GO:0006352 | DNA-dependent transcription, initiation | ||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
Molecular Function | GO:0016987 | sigma factor activity | ||
HMMPfam | PF04539 | Sigma70_r3 | 1.4e-17 | 408-484 |
IPR007627 | RNA polymerase sigma-70 region 2 | |||
Molecular Function | GO:0003677 | DNA binding | ||
Molecular Function | GO:0003700 | sequence-specific DNA binding transcription factor activity | ||
Biological Process | GO:0006352 | DNA-dependent transcription, initiation | ||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
Molecular Function | GO:0016987 | sigma factor activity | ||
HMMPfam | PF04542 | Sigma70_r2 | 2e-18 | 329-399 |
IPR007630 | RNA polymerase sigma-70 region 4 | |||
Molecular Function | GO:0003677 | DNA binding | ||
Molecular Function | GO:0003700 | sequence-specific DNA binding transcription factor activity | ||
Biological Process | GO:0006352 | DNA-dependent transcription, initiation | ||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
Molecular Function | GO:0016987 | sigma factor activity | ||
HMMPfam | PF04545 | Sigma70_r4 | 2.5e-21 | 497-550 |
IPR009042 | RNA polymerase sigma-70 region 1.2 | |||
Molecular Function | GO:0003677 | DNA binding | ||
Molecular Function | GO:0003700 | sequence-specific DNA binding transcription factor activity | ||
Biological Process | GO:0006352 | DNA-dependent transcription, initiation | ||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
Molecular Function | GO:0016987 | sigma factor activity | ||
HMMPfam | PF00140 | Sigma70_r1_2 | 5.3e-05 | 250-285 |
IPR011991 | Winged helix-turn-helix DNA-binding domain | |||
Gene3D | G3DSA:1.10.10.10 | no description | 3.2e-27 | 399-445 492-561 |
IPR013324 | RNA polymerase sigma factor, region 3/4 | |||
Molecular Function | GO:0003677 | DNA binding | ||
Molecular Function | GO:0003700 | sequence-specific DNA binding transcription factor activity | ||
Biological Process | GO:0006352 | DNA-dependent transcription, initiation | ||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
Molecular Function | GO:0016987 | sigma factor activity | ||
superfamily | SSF88659 | Sigma3 | 1.4e-14 | 459-563 402-476 |
IPR013325 | RNA polymerase sigma factor, region 2 | |||
Molecular Function | GO:0003677 | DNA binding | ||
Molecular Function | GO:0003700 | sequence-specific DNA binding transcription factor activity | ||
Biological Process | GO:0006352 | DNA-dependent transcription, initiation | ||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
Molecular Function | GO:0016987 | sigma factor activity | ||
superfamily | SSF88946 | Sigma2 | 3.9e-46 | 246-399 |
IPR014284 | RNA polymerase sigma-70 like domain | |||
Molecular Function | GO:0003677 | DNA binding | ||
Molecular Function | GO:0003700 | sequence-specific DNA binding transcription factor activity | ||
Biological Process | GO:0006352 | DNA-dependent transcription, initiation | ||
Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
Molecular Function | GO:0016987 | sigma factor activity | ||
HMMTigr | TIGR02937 | sigma70-ECF: | 2.6e-33 | 327-551 |
IPR016262 | RNA polymerase sigma factor, SigB/SigC/SigD, plastid | |||
HMMPIR | PIRSF000767 | RNA | 1.1e-224 | 1-565 |
no_ID | ||||
Coil | coil | coiled-coil | NA | 182-210 |
Gene3D | G3DSA:1.10.601.10 | no description | 5.4e-40 | 320-398 |
HMMPanther | PTHR30603 | RNA | 2.2e-122 | 54-564 |
Seg | seg | seg | NA | 11-25 91-125 186-199 253-269 546-559 |
Lj1g3v3330190.1 chlo 12, nucl 1, mito 1
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
Lj1g3v3330190.1 |