Miyakogusa Predicted Gene

Lj1g3v3330180.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1K6W0_SOYBN 1486 82.0 86.3 (tr|I1K6W0) Probable alanine--tRNA ligase, chloroplastic OS=Glycine max PE=3 SV=1
TAIR_pep AT5G22800.1 1244 68.3 79.2 | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA synthetase, class IIc | chr5:7616221-7619961 REVERSE LENGTH=978
Medicago Medtr3g118360.1 1490 81.6 86.5 | alanine-tRNA ligase | HC | chr3:55395797-55404715 | 20130731
Soybean Glyma06g00330.1 1486 82.0 86.3  
LJGI gnl|LJGI|FS318298 882 97.7 97.7 similar to UniRef100_A7P8L7 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3330180.2 length: 974 aa.
IPR002318 Alanine-tRNA ligase, class IIc
method AccNumber shortName E-value location
Molecular Function GO:0000166 nucleotide binding    
Cellular Component GO:0005737 cytoplasm    
FPrintScan PR00980 TRNASYNTHALA 2.8e-27 145-156
267-278
294-307
345-361
369-382
HMMPanther PTHR11777:SF6 SUBFAMILY 0 73-974
HMMTigr TIGR00344 alaS: 5.2e-292 82-950
IPR003156 Phosphoesterase, DHHA1
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF02272 DHHA1 1.7e-12 895-964
IPR012947 Threonyl/alanyl tRNA synthetase, SAD
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005737 cytoplasm    
Molecular Function GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds    
Biological Process GO:0043039 tRNA aminoacylation    
HMMPfam PF07973 tRNA_SAD 2.5e-17 743-786
HMMSmart SM00863 Threonyl 4.5e-19 743-786
IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0004813 alanine-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006419 alanyl-tRNA aminoacylation    
superfamily SSF101353 Putative 8.9e-49 314-547
IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain
Molecular Function GO:0000166 nucleotide binding    
superfamily SSF55186 ThrRS/AlaRS 9.7e-43 642-797
IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0004813 alanine-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006419 alanyl-tRNA aminoacylation    
HMMPfam PF01411 tRNA-synt_2c 1.4e-189 82-644
IPR018165 Alanyl-tRNA synthetase, class IIc, core domain
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004813 alanine-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006419 alanyl-tRNA aminoacylation    
ProfileScan PS50860 AA_TRNA_LIGASE_II_ALA 117.666 77-799
IPR027522 Probable alanine--tRNA ligase, plants
Cellular Component GO:0009507 chloroplast    
HAMAP MF_03134 Ala_tRNA_synth_plantC 31.706 69-973
no_ID  
Coil coil coiled-coil NA 822-843
Gene3D G3DSA:3.30.930.10 no description 2.6e-97 78-309
HMMPanther PTHR11777 ALANYL-TRNA 0 73-974
Seg seg seg NA 16-34
39-53
65-73
367-388
426-437
442-457
630-644
837-855
superfamily SSF55681 Class 8.4e-95 76-313
Wolf-PSORT
Lj1g3v3330180.2	chlo 11, mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3330180.2 Not targeted -49.007 -0.009 -10.392 72.61% -38.606