Miyakogusa Predicted Gene

Lj1g3v3330170.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3S6J8_LOTJA 437 100.0 100.0 (tr|I3S6J8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT2G31610.1 406 91.1 96.3 | Symbols: | Ribosomal protein S3 family protein | chr2:13450384-13451669 FORWARD LENGTH=250
Medicago Medtr1g044660.1 431 98.1 99.5 | 40S ribosomal S3-like protein | HC | chr1:16863157-16866229 | 20130731
Soybean Glyma16g33230.1 431 97.7 99.5  
LJGI gnl|LJGI|TC57325 1259 99.8 99.8 homologue to UniRef100_A7PDZ8 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (95%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3330170.1 length: 214 aa.
IPR001351 Ribosomal protein S3, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
Gene3D G3DSA:3.30.1140.32 no description 1.8e-31 93-193
HMMPfam PF00189 Ribosomal_S3_C 2.9e-18 105-188
superfamily SSF54821 Ribosomal 1.2e-28 92-193
IPR004044 K Homology domain, type 2
Molecular Function GO:0003723 RNA binding    
HMMPfam PF07650 KH_2 3.4e-12 20-94
ProfileScan PS50823 KH_TYPE_2 11.105 21-92
IPR005703 Ribosomal protein S3, eukaryotic/archaeal
Molecular Function GO:0003735 structural constituent of ribosome    
Biological Process GO:0006412 translation    
Cellular Component GO:0015935 small ribosomal subunit    
HMMTigr TIGR01008 rpsC_E_A: 3.8e-71 8-211
IPR009019 K homology domain, prokaryotic type
Molecular Function GO:0003723 RNA binding    
superfamily SSF54814 Prokaryotic 1.4e-24 10-101
IPR015946 K homology domain-like, alpha/beta
Gene3D G3DSA:3.30.300.20 no description 0.00076 21-86
IPR018280 Ribosomal protein S3, conserved site
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
PatternScan PS00548 RIBOSOMAL_S3 NA 147-183
no_ID  
HMMPanther PTHR11760 30S/40S 5.6e-141 1-214
HMMPanther PTHR11760:SF9 40S 5.6e-141 1-214
Wolf-PSORT
Lj1g3v3330170.1	cyto 7, plas 4, cyto_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3330170.1