Miyakogusa Predicted Gene

Lj1g3v3329860.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KJF2_SOYBN 1771 89.5 93.5 (tr|I1KJF2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G05170.1 1479 74.9 84.1 | Symbols: ATVPS11, VPS11 | vacuolar protein sorting 11 | chr2:1870020-1873278 FORWARD LENGTH=932
Medicago Medtr1g019500.1 1753 88.1 92.3 | vacuolar protein sorting-associated-like protein | HC | chr1:5893226-5901376 | 20130731
Soybean Glyma07g13120.1 1771 89.5 93.5  
LJGI gnl|LJGI|TC72284 753 99.2 99.2 similar to UniRef100_A7Q339 Cluster: Chromosome chr12 scaffold_47, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_47, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3329860.1 length: 966 aa.
IPR000547 Clathrin, heavy chain/VPS, 7-fold repeat
method AccNumber shortName E-value location
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
HMMPfam PF00637 Clathrin 6.8e-13 409-549
IPR001841 Zinc finger, RING-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 9.288 862-897
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 8.4e-06 34-253
IPR016528 Vacuolar protein sorting-associated protein 11
HMMPIR PIRSF007860 Vacuolar 0 1-952
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
superfamily SSF50978 WD40 1.4e-07 40-266
IPR024763 Vacuolar protein sorting protein 11, C-terminal
HMMPfam PF12451 VPS11_C 6.6e-14 898-945
no_ID  
Coil coil coiled-coil NA 819-854
HMMPanther PTHR23323 VACUOLAR 0 1-965
HMMPanther PTHR23323:SF24 VACUOLAR 0 1-965
Seg seg seg NA 22-39
369-379
950-965
superfamily SSF57850 RING/U-box 3.2e-06 854-910
Wolf-PSORT
Lj1g3v3329860.1	nucl 3.5, chlo 3, cysk_nucl 2.5, plas 2, E.R. 2, chlo_mito 2, E.R._plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3329860.1