Miyakogusa Predicted Gene

Lj1g3v3329520.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IZF9_MEDTR 1659 76.6 86.8 (tr|G7IZF9) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_3g029530 PE=4 SV=1
TAIR_pep AT1G16480.1 1198 59.2 76.4 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:5625843-5628656 REVERSE LENGTH=937
Medicago Medtr3g029530.1 1659 76.6 86.8 | pentatricopeptide (PPR) repeat protein | HC | chr3:9292413-9288471 | 20130731
Soybean Glyma12g22290.1 1635 78.2 88.3  
LJGI gnl|LJGI|FS347356 1233 100.0 100.0 similar to UniRef100_A7QD49 Cluster: Chromosome undetermined scaffold_80, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_80, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3329520.1 length: 1040 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0089 102-128
232-262
305-330
333-359
504-530
532-561
HMMPfam PF13041 PPR_2 9.7e-11 128-176
431-479
631-673
736-780
HMMTigr TIGR00756 PPR: 4.7e-08 131-163
232-265
305-331
434-461
532-565
635-667
736-768
ProfileScan PS51375 PPR 5.404 128-162
97-127
163-198
230-264
199-229
300-334
265-299
366-400
432-466
401-431
530-564
499-529
632-666
601-631
667-701
733-767
702-732
768-802
804-834
870-904
836-866
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.6e-07 833-873
no_ID  
HMMPanther PTHR24015 FAMILY 9.4e-270 285-1040
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 9.4e-270 285-1040
HMMPfam PF14432 DYW_deaminase 3.7e-13 939-1030
Wolf-PSORT
Lj1g3v3329520.1	chlo 8, nucl 4, mito 1, pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3329520.1