Miyakogusa Predicted Gene

Lj1g3v3329390.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KZI0_SOYBN 1783 88.1 93.1 (tr|I1KZI0) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G59760.1 1558 77.5 86.8 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr1:21984571-21990110 REVERSE LENGTH=988
Medicago Medtr7g080730.1 1769 87.0 92.2 | superkiller viralicidic activity-like protein | HC | chr7:30721960-30732583 | 20130731
Soybean Glyma08g47700.1 1712 80.9 85.9  
LJGI gnl|LJGI|GO023184 1057 100.0 100.0 similar to UniRef100_A7PG35 Cluster: Chromosome chr6 scaffold_15, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_15, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3329390.1 length: 981 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.5e-06 379-454
HMMSmart SM00490 helicase 1.8e-17 365-454
ProfileScan PS51194 HELICASE_CTER 12.321 299-497
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 6.7e-21 62-210
IPR012961 DSH, C-terminal
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08148 DSHCT 6.6e-58 804-981
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2.5e-33 56-239
ProfileScan PS51192 HELICASE_ATP_BIND_1 23.832 68-224
IPR016438 RNA helicase, ATP-dependent, SK12/DOB1
Molecular Function GO:0016817 hydrolase activity, acting on acid anhydrides    
HMMPIR PIRSF005198 Antiviral 0 1-981
IPR025696 rRNA-processing arch domain
HMMPfam PF13234 rRNA_proc-arch 1.8e-77 508-780
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.9e-50 68-472
no_ID  
Coil coil coiled-coil NA 524-545
722-750
867-888
936-957
Gene3D G3DSA:3.40.50.300 no description 2.3e-22 55-221
377-467
HMMPanther PTHR11752 HELICASE 0 51-981
HMMPanther PTHR11752:SF2 HELICASE 0 51-981
Seg seg seg NA 39-47
535-546
592-601
Wolf-PSORT
Lj1g3v3329390.1	nucl 5, cyto 4, chlo 2, cyto_pero 2, cyto_E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3329390.1