Miyakogusa Predicted Gene

Lj1g3v3328650.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SBD5_LOTJA 665 89.1 89.6 (tr|I3SBD5) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G38470.1 432 59.2 69.3 | Symbols: RAD23D | Rad23 UV excision repair protein family | chr5:15404720-15407500 FORWARD LENGTH=378
Medicago Medtr7g407040.1 510 71.1 76.1 | RAD23 UV excision repair family protein | HC | chr7:1064684-1059097 | 20130731
Soybean Glyma18g53470.1 492 66.3 76.1  
LJGI gnl|LJGI|TC57960 2248 100.0 100.0 similar to UniRef100_A7PAP6 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (82%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3328650.1 length: 376 aa.
IPR000449 Ubiquitin-associated/translation elongation factor EF1B, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00627 UBA 4.5e-08 158-193
332-367
IPR000626 Ubiquitin
Molecular Function GO:0005515 protein binding    
HMMPfam PF00240 ubiquitin 8.4e-19 6-77
HMMSmart SM00213 Ubiquitin 8.9e-20 1-75
IPR004806 UV excision repair protein Rad23
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006289 nucleotide-excision repair    
FPrintScan PR01839 RAD23PROTEIN 5.7e-31 282-304
326-342
343-357
358-373
HMMTigr TIGR00601 rad23: 6.1e-108 1-374
IPR006636 Heat shock chaperonin-binding
HMMSmart SM00727 Heat 4.2e-07 254-297
IPR009060 UBA-like
Molecular Function GO:0005515 protein binding    
superfamily SSF46934 UBA-like 1.8e-11 304-376
152-216
IPR015360 XPC-binding domain
Molecular Function GO:0003684 damaged DNA binding    
Biological Process GO:0006289 nucleotide-excision repair    
Biological Process GO:0043161 proteasomal ubiquitin-dependent protein catabolic process    
Gene3D G3DSA:1.10.10.540 no description 9.7e-28 252-317
HMMPfam PF09280 XPC-binding 5.8e-22 256-313
superfamily SSF101238 XPC-binding 2.1e-19 251-322
IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote
HMMSmart SM00165 Ubiquitin 4e-08 155-195
332-369
ProfileScan PS50030 UBA 14.981 154-196
330-370
IPR019955 Ubiquitin supergroup
ProfileScan PS50053 UBIQUITIN_2 18.693 1-76
no_ID  
Gene3D G3DSA:1.10.8.10 no description 2.5e-21 151-199
329-374
Gene3D G3DSA:3.10.20.90 no description 2.6e-19 1-78
HMMPanther PTHR10621 UV 1.1e-142 2-376
HMMPanther PTHR10621:SF0 UV 1.1e-142 2-376
Seg seg seg NA 80-118
superfamily SSF54236 Ubiquitin-like 8.7e-24 1-95
Wolf-PSORT
Lj1g3v3328650.1	cyto 9, chlo 2, nucl 1.5, chlo_mito 1.5, cysk_nucl 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3328650.1