Miyakogusa Predicted Gene

Lj1g3v3244630.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7MVF2_SOYBN 722 66.8 76.6 (tr|K7MVF2) DNA ligase OS=Glycine max PE=3 SV=1

TAIR_pep AT1G66730.1 450 46.2 61.7 | Symbols: AtLIG6, LIG6 | DNA LIGASE 6 | chr1:24884991-24891823 FORWARD LENGTH=1396

Medicago Medtr7g082860.5 721 64.0 73.9 | ATP-dependent DNA ligase | HC | chr7:31777246-31789508 | 20130731

Soybean Glyma18g53010.1 536 61.4 70.1

LJGI --No_Hits--

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v3244630.1 length: 550 aa.

IPR011084 DNA repair metallo-beta-lactamase

method AccNumber shortName E-value location

HMMPfam PF07522 DRMBL 6.3e-23 95-199

no_ID

HMMPanther PTHR23240 DNA 2.6e-52 1-198

HMMPanther PTHR23240:SF1 DNA 2.6e-52 1-198

Seg seg seg NA 336-354
396-418

Wolf-PSORT

Lj1g3v3244630.1 nucl 12, cyto 1, extr 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v3244630.1 Not targeted -38.527 -2.163 -2.085 49.93% -34.279

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7MVF2_SOYBN	722	66.8	76.6	(tr\|K7MVF2) DNA ligase OS=Glycine max PE=3 SV=1
TAIR_pep	AT1G66730.1	450	46.2	61.7	\| Symbols: AtLIG6, LIG6 \| DNA LIGASE 6 \| chr1:24884991-24891823 FORWARD LENGTH=1396
Medicago	Medtr7g082860.5	721	64.0	73.9	\| ATP-dependent DNA ligase \| HC \| chr7:31777246-31789508 \| 20130731
Soybean	Glyma18g53010.1	536	61.4	70.1
LJGI	--No_Hits--

IPR011084	DNA repair metallo-beta-lactamase
Lj1g3v3244630.1				length: 550 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF07522	DRMBL	6.3e-23	95-199
no_ID
HMMPanther	PTHR23240	DNA	2.6e-52	1-198
HMMPanther	PTHR23240:SF1	DNA	2.6e-52	1-198
Seg	seg	seg	NA	336-354 396-418