Miyakogusa Predicted Gene
- Lj1g3v3218060.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JDQ5_SOYBN |
181 |
69.1 |
77.9 |
(tr|I1JDQ5) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G02530.1 |
140 |
71.0 |
87.1 |
| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:564332-565776 REVERSE LENGTH=292 |
| Medicago |
Medtr7g024090.1 |
152 |
59.2 |
68.2 |
| RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr7:7894145-7897152 | 20130731 |
| Soybean |
Glyma02g10380.1 |
181 |
69.1 |
77.9 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3218060.2 |
length: 183 aa. |
| IPR000504 |
RNA recognition motif domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| HMMPfam |
PF00076 |
RRM_1 |
8.8e-14 |
77-145 |
| HMMSmart |
SM00360 |
RNA |
7.3e-17 |
76-148 |
| ProfileScan |
PS50102 |
RRM |
15.102 |
75-152 |
| IPR012677 |
Nucleotide-binding, alpha-beta plait |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Gene3D |
G3DSA:3.30.70.330 |
no description |
1.1e-20 |
49-149 |
| no_ID |
|
| HMMPanther |
PTHR19965 |
RNA |
1.9e-39 |
15-183 |
| HMMPanther |
PTHR19965:SF8 |
RNA |
1.9e-39 |
15-183 |
| Seg |
seg |
seg |
NA |
15-33 |
| superfamily |
SSF54928 |
RNA-binding |
9.7e-22 |
34-150 |
- Wolf-PSORT
Lj1g3v3218060.2 nucl 7, mito 4, cyto_nucl 4, cysk_nucl 4, nucl_plas 4
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3218060.2 |
|