Miyakogusa Predicted Gene

Lj1g3v3218020.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N543_SOYBN 1288 74.4 81.2 (tr|I1N543) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT2G39620.1 749 46.1 64.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:16518968-16521478 REVERSE LENGTH=836
Medicago Medtr3g026690.1 1268 71.4 81.8 | PPR containing plant-like protein | HC | chr3:8195048-8190900 | 20130731
Soybean Glyma18g52500.1 1339 77.8 85.0  
LJGI gnl|LJGI|TC67711 54.0 94.3 94.3 similar to UniRef100_A7QWH8 Cluster: Chromosome undetermined scaffold_203, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_203, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3218020.1 length: 914 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0079 173-197
200-229
270-295
298-328
373-396
470-498
675-700
776-801
HMMPfam PF13041 PPR_2 1.5e-08 96-142
397-444
498-544
599-644
700-747
HMMTigr TIGR00756 PPR: 6.3e-06 99-131
172-198
200-233
270-295
298-331
399-432
500-534
602-635
703-736
ProfileScan PS51375 PPR 8.210 96-130
197-231
166-196
131-165
296-330
265-295
397-431
366-396
498-532
467-497
432-466
533-567
600-634
568-598
701-735
670-700
635-669
772-802
736-771
838-872
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.3e-05 723-724
801-860
no_ID  
HMMPanther PTHR24015 FAMILY 1.1e-199 50-879
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 1.1e-199 50-879
Seg seg seg NA 11-35
322-333
Wolf-PSORT
Lj1g3v3218020.1	chlo 9, mito 2, nucl 1, plas 1, E.R. 1, cyto_mito 1, nucl_plas 1, E.R._plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3218020.1