Miyakogusa Predicted Gene

Lj1g3v3217860.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N537_SOYBN 1241 83.3 91.4 (tr|I1N537) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G12770.1 916 62.5 80.3 | Symbols: MEF22 | mitochondrial editing factor 22 | chr3:4057027-4059193 REVERSE LENGTH=694
Medicago Medtr7g023780.1 1170 79.2 87.6 | editing factor 22 | HC | chr7:7790817-7787040 | 20130731
Soybean Glyma18g52440.1 1185 83.7 91.9  
LJGI gnl|LJGI|TC79638 60.0 91.3 91.3 similar to UniRef100_A7P5R6 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3217860.1 length: 727 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.95 300-319
395-419
494-518
HMMPfam PF13041 PPR_2 9.8e-08 117-164
219-257
320-359
420-467
HMMTigr TIGR00756 PPR: 0.00094 121-153
221-255
322-356
423-456
ProfileScan PS51375 PPR 6.412 118-152
219-253
188-218
153-187
254-288
320-354
289-319
421-455
390-420
456-490
491-526
557-591
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 6.1e-05 418-419
no_ID  
HMMPanther PTHR24015 FAMILY 0 69-727
HMMPanther PTHR24015:SF78 SUBFAMILY 0 69-727
HMMPfam PF14432 DYW_deaminase 4.9e-15 605-717
Seg seg seg NA 4-15
Wolf-PSORT
Lj1g3v3217860.1	chlo 6, cyto 5, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3217860.1