Miyakogusa Predicted Gene

Lj1g3v3207790.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N529_SOYBN 766 92.9 95.7 (tr|I1N529) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G55320.1 729 86.9 93.9 | Symbols: PGP20 | P-glycoprotein 20 | chr3:20507391-20513393 REVERSE LENGTH=1408
Medicago Medtr7g023340.2 766 92.7 95.7 | ABC transporter B family protein | HC | chr7:7642581-7653341 | 20130731
Soybean Glyma18g52350.1 766 92.9 95.7  
LJGI gnl|LJGI|TC80984 1011 99.8 99.8 homologue to UniRef100_A7PJ09 Cluster: Chromosome chr13 scaffold_17, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_17, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3207790.1 length: 396 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 1.8e-10 4-99
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 4.9e-18 189-313
ProfileScan PS50893 ABC_TRANSPORTER_2 22.709 147-384
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 4.6e-15 174-361
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 2.8e-13 8-305
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 11.325 1-116
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.8e-63 147-370
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 1.9e-07 8-132
Gene3D G3DSA:3.40.50.300 no description 1.5e-74 147-379
HMMPanther PTHR24221 FAMILY 1.9e-190 1-386
HMMPanther PTHR24221:SF24 SUBFAMILY 1.9e-190 1-386
Seg seg seg NA 311-321
Putative transmembrane regions
  From To
TM segments
SOSUI		 50 72
77 99
103 125
Wolf-PSORT
Lj1g3v3207790.1	cyto 6.5, cyto_nucl 4, chlo 3, extr 1, vacu 1, E.R. 1, pero 1, E.R._vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3207790.1