Miyakogusa Predicted Gene

Lj1g3v3206750.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KPR4_MEDTR 688 64.4 79.2 (tr|G7KPR4) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_6g069300 PE=4 SV=1
TAIR_pep AT1G12700.1 397 39.3 61.6 | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735
Medicago Medtr6g069300.1 688 64.4 79.2 | pentatricopeptide (PPR) repeat protein | HC | chr6:24933458-24936238 | 20130731
Soybean Glyma09g30530.1 669 62.6 81.2  
LJGI gnl|LJGI|FS341384 476 83.1 83.1 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3206750.2 length: 522 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.012 92-120
HMMPfam PF12854 PPR_1 5.4e-11 262-288
365-393
HMMPfam PF13041 PPR_2 7.8e-14 123-172
190-238
296-344
400-449
472-517
HMMTigr TIGR00756 PPR: 2e-07 92-125
126-159
161-185
193-227
228-255
263-297
298-332
334-366
368-402
403-437
438-468
474-506
ProfileScan PS51375 PPR 5.744 89-123
54-88
124-158
191-225
159-189
226-260
261-295
296-330
331-365
366-400
401-435
436-470
471-505
506-522
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 9.1e-05 36-285
no_ID  
HMMPanther PTHR24015 FAMILY 2.3e-163 31-521
HMMPanther PTHR24015:SF0 SUBFAMILY 2.3e-163 31-521
superfamily SSF48452 TPR-like 0.015 22-464
89-187
Wolf-PSORT
Lj1g3v3206750.2	chlo 8, mito 2, extr 2, E.R. 1, pero 1, cyto_mito 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3206750.2