| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | G7L565_MEDTR | 393 | 65.7 | 83.6 | (tr|G7L565) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_7g012890 PE=4 SV=1 |
| TAIR_pep | AT1G62670.1 | 221 | 35.6 | 65.1 | | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630 |
| Medicago | Medtr1g050495.1 | 402 | 67.8 | 82.5 | | pentatricopeptide (PPR) repeat protein | LC | chr1:19488986-19490777 | 20130731 |
| Soybean | Glyma09g30530.1 | 376 | 62.9 | 80.4 | |
| LJGI | gnl|LJGI|GO030841 | 369 | 84.3 | 84.3 | weakly similar to UniRef100_A7R617 Cluster: Chromosome undetermined scaffold_1129, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_1129, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%) |
| Lj1g3v3206750.1 | length: 287 aa. | |||
| IPR002885 | Pentatricopeptide repeat | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| HMMPfam | PF12854 | PPR_1 | 3.1e-08 | 10-36 39-71 74-106 112-141 |
| HMMPfam | PF13041 | PPR_2 | 2.3e-16 | 148-197 219-266 |
| HMMTigr | TIGR00756 | PPR: | 2.4e-05 | 12-45 46-79 82-114 116-150 151-184 186-219 222-255 256-285 |
| ProfileScan | PS51375 | PPR | 10.698 | 9-43 44-78 79-113 114-148 149-183 184-218 219-253 254-287 |
| IPR011990 | Tetratricopeptide-like helical | |||
| Molecular Function | GO:0005515 | protein binding | ||
| Gene3D | G3DSA:1.25.40.10 | no description | 0.00038 | 16-282 |
| no_ID | ||||
| HMMPanther | PTHR24015 | FAMILY | 4.2e-96 | 6-282 |
| HMMPanther | PTHR24015:SF0 | SUBFAMILY | 4.2e-96 | 6-282 |
Lj1g3v3206750.1 cyto 11, nucl 1, vacu 1, golg 1
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj1g3v3206750.1 |