Miyakogusa Predicted Gene

Lj1g3v3194560.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3STQ8_LOTJA 196 85.3 85.3 (tr|I3STQ8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT3G55280.2 180 79.3 81.0 | Symbols: RPL23AB | ribosomal protein L23AB | chr3:20500667-20501519 FORWARD LENGTH=154
Medicago Medtr4g063060.1 191 83.6 84.5 | 60S ribosomal protein L23a-2 | HC | chr4:23319050-23321520 | 20130731
Soybean Glyma18g52310.1 190 81.9 83.6  
LJGI gnl|LJGI|TC68825 934 100.0 100.0 homologue to UniRef100_Q9AT35 Cluster: 60S ribosomal protein L23a; n=1; Daucus carota|Rep: 60S ribosomal protein L23a - Daucus carota (Carrot), partial (97%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3194560.1 length: 155 aa.
IPR001014 Ribosomal protein L23/L25, conserved site
method AccNumber shortName E-value location
PatternScan PS00050 RIBOSOMAL_L23 NA 133-148
IPR005633 Ribosomal protein L23/L25, N-terminal
HMMPfam PF03939 Ribosomal_L23eN 8.4e-18 13-65
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1e-35 71-155
IPR012678 Ribosomal protein L23/L15e core domain
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
superfamily SSF54189 Ribosomal 1.6e-27 72-149
IPR013025 Ribosomal protein L25/L23
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPfam PF00276 Ribosomal_L23 2.5e-18 73-151
IPR019985 Ribosomal protein L23
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMTigr TIGR03636 L23_arch: 8.9e-29 79-155
no_ID  
HMMPanther PTHR11620 60S 1.2e-99 4-155
Seg seg seg NA 4-39
98-114
Wolf-PSORT
Lj1g3v3194560.1	nucl 12, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3194560.1