Miyakogusa Predicted Gene

Lj1g3v3139990.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KWS1_SOYBN 1059 71.2 77.8 (tr|I1KWS1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G05830.2 644 53.4 65.2 | Symbols: ATX2 | trithorax-like protein 2 | chr1:1754452-1761225 FORWARD LENGTH=1083
Medicago Medtr7g021365.3 982 68.8 75.8 | histone-lysine N-methyltransferase ATX2-like protein | HC | chr7:6764175-6755447 | 20130731
Soybean Glyma08g29010.1 1059 71.2 77.8  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3139990.1 length: 766 aa.
IPR000313 PWWP
method AccNumber shortName E-value location
HMMPfam PF00855 PWWP 1.8e-10 315-376
HMMSmart SM00293 domain 3e-07 316-379
ProfileScan PS50812 PWWP 14.039 318-381
IPR001965 Zinc finger, PHD-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 PHD 1.3e-06 634-681
IPR003888 FY-rich, N-terminal
Cellular Component GO:0005634 nucleus    
HMMPfam PF05964 FYRN 3.4e-11 467-517
HMMSmart SM00541 "FY-rich" 1.8e-07 475-519
ProfileScan PS51542 FYRN 23.572 460-519
IPR003889 FY-rich, C-terminal
Cellular Component GO:0005634 nucleus    
HMMPfam PF05965 FYRC 1.6e-13 525-601
HMMSmart SM00542 "FY-rich" 7.3e-10 527-616
ProfileScan PS51543 FYRC 21.097 523-609
IPR011011 Zinc finger, FYVE/PHD-type
superfamily SSF57903 FYVE/PHD 8.7e-12 617-698
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 5.4e-08 633-682
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 635-680
IPR019787 Zinc finger, PHD-finger
Molecular Function GO:0005515 protein binding    
ProfileScan PS50016 ZF_PHD_2 8.867 632-683
no_ID  
Gene3D G3DSA:2.30.30.160 no description 1.9e-19 313-410
HMMPanther PTHR13793 PHD 9.4e-94 627-759
HMMPanther PTHR13793:SF51 SUBFAMILY 9.4e-94 627-759
HMMPfam PF13831 PHD_2 2.6e-12 647-681
HMMPfam PF13832 zf-HC5HC2H_2 2e-21 688-759
Seg seg seg NA 12-24
50-61
74-90
113-126
173-190
597-609
685-694
superfamily SSF63748 Tudor/PWWP/MBT 9e-06 308-413
220-274
Wolf-PSORT
Lj1g3v3139990.1	nucl 11.5, cyto_nucl 6.5, chlo 1, plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3139990.1