Miyakogusa Predicted Gene

Lj1g3v3091540.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KWM5_SOYBN 1538 86.0 92.2 (tr|I1KWM5) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G02330.1 1002 55.3 71.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:473881-476592 REVERSE LENGTH=903
Medicago Medtr7g417770.1 1497 80.7 89.8 | PPR containing plant-like protein | HC | chr7:5697167-5694522 | 20130731
Soybean Glyma08g28210.1 1536 86.0 92.2  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3091540.1 length: 890 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0047 80-105
109-135
141-169
214-240
344-371
416-441
517-542
718-742
HMMPfam PF13041 PPR_2 3.8e-08 240-287
441-489
543-590
644-691
HMMTigr TIGR00756 PPR: 1.4e-07 141-172
215-242
242-272
344-374
646-679
ProfileScan PS51375 PPR 7.432 139-173
106-136
75-105
40-74
209-243
174-208
244-274
341-375
310-340
411-445
477-511
446-476
543-577
512-542
644-678
613-643
578-612
715-749
679-709
781-815
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 4.7e-09 540-800
no_ID  
HMMPanther PTHR24015 FAMILY 0 91-875
HMMPanther PTHR24015:SF52 PENTATRICOPEPTIDE 0 91-875
superfamily SSF48452 TPR-like 8.5e-08 613-796
Wolf-PSORT
Lj1g3v3091540.1	mito 7, chlo 5, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3091540.1