Miyakogusa Predicted Gene

Lj1g3v3075110.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7L565_MEDTR 714 68.0 80.6 (tr|G7L565) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_7g012890 PE=4 SV=1
TAIR_pep AT1G12300.1 394 36.6 57.9 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4184163-4186076 REVERSE LENGTH=637
Medicago Medtr0019s0210.3 720 68.9 81.8 | pentatricopeptide (PPR) repeat protein | LC | scaffold0019:127328-125664 | 20130731
Soybean Glyma09g30530.1 686 65.2 80.2  
LJGI gnl|LJGI|FS333759 632 87.3 87.3 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3075110.1 length: 517 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 2.6e-09 149-179
185-216
288-321
HMMPfam PF13041 PPR_2 1.2e-13 82-130
222-271
327-376
378-426
451-494
HMMTigr TIGR00756 PPR: 1.6e-11 85-119
120-153
155-187
190-223
225-259
260-294
295-329
331-364
380-414
416-447
451-484
ProfileScan PS51375 PPR 9.602 48-82
83-117
118-152
153-187
188-222
223-257
258-292
293-327
328-362
378-412
413-447
448-482
483-517
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.6e-07 341-473
no_ID  
HMMPanther PTHR24015 FAMILY 1.3e-160 29-515
HMMPanther PTHR24015:SF0 SUBFAMILY 1.3e-160 29-515
Seg seg seg NA 11-26
superfamily SSF48452 TPR-like 0.0051 223-355
376-475
Putative transmembrane regions
  From To
TM segments
SOSUI		 217 239
Wolf-PSORT
Lj1g3v3075110.1	chlo 6, extr 2, mito 1.5, cyto_mito 1.5, nucl 1, cyto 1, E.R. 1, pero 1, cyto_nucl 1, cyto_pero 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3075110.1