Miyakogusa Predicted Gene

Lj1g3v3053790.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KR16_MEDTR 345 71.0 77.2 (tr|G7KR16) MADS-box protein OS=Medicago truncatula GN=MTR_7g016630 PE=3 SV=1
TAIR_pep AT5G60910.1 219 49.4 63.8 | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242
Medicago Medtr7g016630.1 345 71.0 77.2 | MADS-box transcription factor | HC | chr7:5251411-5258296 | 20130731
Soybean Glyma08g27680.1 323 67.7 78.1  
LJGI gnl|LJGI|GO026211 125 78.8 78.8 similar to UniRef100_A7PAE3 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (51%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3053790.1 length: 253 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 4.1e-29 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 8.9e-26 9-59
HMMSmart SM00432 no description 5.7e-39 1-60
ProfileScan PS50066 MADS_BOX_2 30.628 1-61
superfamily SSF55455 SRF-like 4.3e-32 2-95
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 6.4e-25 76-169
ProfileScan PS51297 K_BOX 14.013 86-177
no_ID  
Coil coil coiled-coil NA 123-144
152-173
HMMPanther PTHR11945 MADS 7e-76 1-173
HMMPanther PTHR11945:SF19 MADS 7e-76 1-173
Seg seg seg NA 165-179
Wolf-PSORT
Lj1g3v3053790.1	nucl 12, mito 1, plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3053790.1