Miyakogusa Predicted Gene
- Lj1g3v3028300.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3S275_LOTJA |
309 |
96.9 |
99.4 |
(tr|I3S275) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT5G23535.1 |
271 |
82.4 |
91.2 |
| Symbols: | KOW domain-containing protein | chr5:7935871-7937127 FORWARD LENGTH=159 |
| Medicago |
Medtr1g047130.2 |
293 |
89.3 |
96.9 |
| 50S ribosomal L24-like protein | HC | chr1:17777939-17783041 | 20130731 |
| Soybean |
Glyma17g31080.2 |
295 |
91.8 |
96.2 |
|
| LJGI |
gnl|LJGI|TC66957 |
957 |
100.0 |
100.0 |
similar to UniRef100_A7PUD1 Cluster: Chromosome chr7 scaffold_31, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_31, whole genome shotgun sequence - Vitis vinifera (Grape), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3028300.1 |
length: 159 aa. |
| IPR003256 |
Ribosomal protein L24 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003735 |
structural constituent of ribosome |
|
|
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Cellular Component |
GO:0005840 |
ribosome |
|
|
| Biological Process |
GO:0006412 |
translation |
|
|
| HMMPanther |
PTHR12903 |
MITOCHONDRIAL |
3.1e-57 |
1-156 |
| HMMTigr |
TIGR01079 |
rplX_bact: |
3e-28 |
14-107 |
| IPR005824 |
KOW |
| HMMPfam |
PF00467 |
KOW |
1.7e-09 |
17-48 |
| HMMSmart |
SM00739 |
KOW |
9.3e-06 |
14-41 |
| IPR005825 |
Ribosomal protein L24/L26, conserved site |
| Molecular Function |
GO:0003735 |
structural constituent of ribosome |
|
|
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Cellular Component |
GO:0005840 |
ribosome |
|
|
| Biological Process |
GO:0006412 |
translation |
|
|
| PatternScan |
PS01108 |
RIBOSOMAL_L24 |
NA |
18-35 |
| IPR008991 |
Translation protein SH3-like domain |
| superfamily |
SSF50104 |
Translation |
5.9e-29 |
14-112 |
| IPR014722 |
Ribosomal protein L2 domain 2 |
| Gene3D |
G3DSA:2.30.30.30 |
no description |
6.8e-24 |
7-101 |
- Wolf-PSORT
Lj1g3v3028300.1 cyto 9, nucl 2, chlo 1, mito 1, E.R. 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3028300.1 |
|