Miyakogusa Predicted Gene

Lj1g3v2980350.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KN57_SOYBN 652 47.8 61.3 (tr|K7KN57) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G13800.1 450 33.8 51.8 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4731056-4733707 REVERSE LENGTH=883
Medicago Medtr7g011500.1 605 44.7 59.3 | pentatricopeptide (PPR) repeat protein | LC | chr7:3104228-3097978 | 20130731
Soybean Glyma07g34170.1 617 46.0 59.7  
LJGI gnl|LJGI|BP041405 317 82.2 82.2 weakly similar to UniRef100_A7QFV5 Cluster: Chromosome undetermined scaffold_89, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_89, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2980350.1 length: 856 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.015 356-380
456-486
494-521
593-621
632-655
663-691
HMMPfam PF13041 PPR_2 7.1e-15 174-222
282-327
386-431
523-572
694-740
764-813
HMMTigr TIGR00756 PPR: 6.9e-09 177-209
211-244
282-315
317-349
386-419
423-455
492-525
526-559
562-592
632-660
662-696
698-731
767-801
802-835
ProfileScan PS51375 PPR 13.680 44-78
80-115
209-243
174-208
139-173
279-313
244-278
314-348
384-418
349-383
419-453
454-488
489-523
524-558
559-593
625-659
594-624
660-694
695-729
730-764
765-799
800-834
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00028 314-445
no_ID  
HMMPanther PTHR24015 FAMILY 1.8e-148 29-822
HMMPanther PTHR24015:SF0 SUBFAMILY 1.8e-148 29-822
Seg seg seg NA 121-132
superfamily SSF48452 TPR-like 0.01 314-411
Wolf-PSORT
Lj1g3v2980350.1	chlo 10, nucl 2, mito 1.5, cyto_mito 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2980350.1