Miyakogusa Predicted Gene

Lj1g3v2980340.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KN57_SOYBN 654 46.9 61.6 (tr|K7KN57) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G13800.1 465 34.4 52.2 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4731056-4733707 REVERSE LENGTH=883
Medicago Medtr3g091500.1 605 43.5 60.9 | pentatricopeptide (PPR) repeat protein | LC | chr3:41625715-41628184 | 20130731
Soybean Glyma07g34170.1 619 45.8 60.5  
LJGI gnl|LJGI|BP041405 381 83.8 83.8 weakly similar to UniRef100_A7QFV5 Cluster: Chromosome undetermined scaffold_89, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_89, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2980340.1 length: 858 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.048 359-382
497-523
528-558
566-593
595-622
631-658
HMMPfam PF12854 PPR_1 7.9e-08 382-414
HMMPfam PF13041 PPR_2 3.6e-14 175-224
282-329
425-468
696-742
767-815
HMMTigr TIGR00756 PPR: 3.8e-05 179-211
213-247
283-317
318-351
357-386
388-421
425-457
458-491
494-526
665-698
700-733
769-803
804-837
ProfileScan PS51375 PPR 12.145 47-81
176-210
141-175
211-245
281-315
246-280
316-350
386-420
351-385
421-455
456-490
491-525
526-560
561-595
627-661
596-626
697-731
662-696
767-801
732-766
802-836
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 5.1e-06 558-559
no_ID  
HMMPanther PTHR24015 FAMILY 2.6e-153 32-841
HMMPanther PTHR24015:SF0 SUBFAMILY 2.6e-153 32-841
superfamily SSF48452 TPR-like 0.015 316-413
391-722
421-491
Wolf-PSORT
Lj1g3v2980340.1	chlo 6, mito 3.5, cyto_mito 2.5, nucl 2, cyto 2, cyto_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2980340.1