Miyakogusa Predicted Gene

Lj1g3v2975960.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LFQ6_SOYBN 1157 81.9 90.8 (tr|K7LFQ6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G50390.1 885 60.7 76.9 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:20520789-20522980 REVERSE LENGTH=701
Medicago Medtr3g012530.1 1052 72.5 83.2 | pentatricopeptide (PPR) repeat protein | HC | chr3:3530268-3532784 | 20130731
Soybean Glyma08g17040.1 1089 77.5 86.1  
LJGI gnl|LJGI|TC78293 908 91.3 91.3 weakly similar to UniRef100_A7PHH0 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2975960.1 length: 696 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.051 160-187
190-217
264-288
465-486
530-559
HMMPfam PF13041 PPR_2 1.4e-12 289-336
389-436
HMMTigr TIGR00756 PPR: 4.7e-08 125-157
293-324
364-391
392-425
ProfileScan PS51375 PPR 8.638 122-156
157-191
289-323
258-288
223-257
324-358
390-424
359-389
425-460
461-491
527-561
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3.7e-07 358-551
no_ID  
HMMPanther PTHR24015 FAMILY 0 24-696
HMMPanther PTHR24015:SF151OS03G0849800 PROTEIN 0 24-696
HMMPfam PF14432 DYW_deaminase 2e-13 567-686
Seg seg seg NA 19-31
Wolf-PSORT
Lj1g3v2975960.1	nucl 7, cyto 5, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2975960.1