Miyakogusa Predicted Gene
- Lj1g3v2975950.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B9VJS9_LOTJA |
1626 |
99.1 |
99.4 |
(tr|B9VJS9) Starch synthase IIb OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G01180.1 |
952 |
63.2 |
73.5 |
| Symbols: AtSS2, SS2 | starch synthase 2 | chr3:62456-65678 REVERSE LENGTH=792 |
| Medicago |
Medtr6g012380.1 |
1016 |
68.2 |
76.8 |
| granule bound starch synthase | HC | chr6:3736016-3743000 | 20130731 |
| Soybean |
Glyma19g02690.1 |
1043 |
64.5 |
75.0 |
|
| LJGI |
gnl|LJGI|FS321561 |
676 |
100.0 |
100.0 |
similar to UniRef100_A7PMX5 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v2975950.2 |
length: 790 aa. |
| IPR001296 |
Glycosyl transferase, family 1 |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| HMMPfam |
PF00534 |
Glycos_transf_1 |
9.5e-18 |
600-744 |
| IPR011835 |
Glycogen/starch synthase, ADP-glucose type |
| Molecular Function |
GO:0009011 |
starch synthase activity |
|
|
| Biological Process |
GO:0009250 |
glucan biosynthetic process |
|
|
| HAMAP |
MF_00484 |
Glycogen_synth |
36.467 |
299-786 |
| HMMTigr |
TIGR02095 |
glgA: |
1.2e-167 |
299-783 |
| IPR013534 |
Starch synthase, catalytic domain |
| HMMPfam |
PF08323 |
Glyco_transf_5 |
1.1e-64 |
300-542 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2000 |
no description |
1.6e-73 |
557-767 |
| HMMPanther |
PTHR12526 |
GLYCOSYLTRANSFERASE |
7.6e-191 |
297-790 |
| HMMPanther |
PTHR12526:SF17 |
STARCH |
7.6e-191 |
297-790 |
| superfamily |
SSF53756 |
UDP-Glycosyltransferase/glycogen |
9.4e-105 |
299-783 |
- Wolf-PSORT
Lj1g3v2975950.2 nucl 6, chlo 4, cyto 1, vacu 1, pero 1, cyto_pero 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v2975950.2 |
|