Miyakogusa Predicted Gene
- Lj1g3v2938480.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
database |
Accession |
Score |
Iden (%) |
Posi (%) |
Definition |
TrEMBL |
I1LFM6_SOYBN |
610 |
85.8 |
92.5 |
(tr|I1LFM6) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
TAIR_pep |
AT1G21070.1 |
541 |
75.0 |
85.2 |
| Symbols: | Nucleotide-sugar transporter family protein | chr1:7376148-7377810 REVERSE LENGTH=348 |
Medicago |
Medtr1g026590.1 |
587 |
85.3 |
91.9 |
| nucleotide/sugar transporter family protein | HC | chr1:8678076-8674827 | 20130731 |
Soybean |
Glyma11g00210.1 |
610 |
85.8 |
92.5 |
|
LJGI |
gnl|LJGI|TC57904 |
2058 |
100.0 |
100.0 |
similar to UniRef100_A7QPK9 Cluster: Chromosome chr18 scaffold_137, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_137, whole genome shotgun sequence - Vitis vinifera (Grape), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2938480.1 |
length: 345 aa. |
IPR004853 |
Domain of unknown function DUF250 |
method |
AccNumber |
shortName |
E-value |
location |
HMMPfam |
PF03151 |
TPT |
4.7e-30 |
156-298 |
no_ID |
|
HMMPanther |
PTHR11132 |
SOLUTE |
6.3e-86 |
9-326 |
Seg |
seg |
seg |
NA |
131-150 |
superfamily |
SSF103481 |
Multidrug |
5.1e-06 |
194-305 |
- Putative transmembrane regions
|
From |
To |
TM segments
SOSUI |
8 |
30 |
50 |
72 |
77 |
99 |
105 |
127 |
139 |
161 |
191 |
213 |
228 |
250 |
271 |
293 |
- Wolf-PSORT
Lj1g3v2938480.1 cyto 4, nucl 3, pero 3, vacu 2, nucl_plas 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
Lj1g3v2938480.1 |
|