Miyakogusa Predicted Gene
- Lj1g3v2842350.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7KSE4_MEDTR |
896 |
75.7 |
83.9 |
(tr|G7KSE4) Transmembrane protein OS=Medicago truncatula GN=MTR_7g080490 PE=4 SV=1 |
| TAIR_pep |
AT3G03305.1 |
709 |
65.2 |
77.9 |
| Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:775504-778271 REVERSE LENGTH=743 |
| Medicago |
Medtr7g080490.1 |
896 |
75.7 |
83.9 |
| calcineurin-like metallo-phosphoesterase superfamily protein | HC | chr7:30632381-30637324 | 20130731 |
| Soybean |
Glyma18g47990.1 |
880 |
77.6 |
84.5 |
|
| LJGI |
gnl|LJGI|TC62986 |
1382 |
100.0 |
100.0 |
similar to UniRef100_A7R4B4 Cluster: Chromosome undetermined scaffold_644, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_644, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v2842350.1 |
length: 572 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:3.60.21.10 |
no description |
2.1e-17 |
59-357 |
| HMMPanther |
PTHR14795 |
HELICASE |
6.9e-164 |
1-571 |
| Seg |
seg |
seg |
NA |
521-535 |
| superfamily |
SSF56300 |
Metallo-dependent |
1.5e-25 |
55-359 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
17 |
39 |
| 508 |
530 |
- Wolf-PSORT
Lj1g3v2842350.1 plas 10, cyto 1, mito 1, vacu 1, E.R. 1, E.R._vacu 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v2842350.1 |
|