Miyakogusa Predicted Gene

Lj1g3v2839220.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KRL3_MEDTR 650 87.9 93.3 (tr|G7KRL3) Calreticulin-3 OS=Medicago truncatula GN=MTR_7g080370 PE=3 SV=1
TAIR_pep AT1G08450.1 561 79.0 88.9 | Symbols: CRT3, PSL1, EBS2, AtCRT3 | calreticulin 3 | chr1:2668008-2671800 REVERSE LENGTH=424
Medicago Medtr7g080370.1 650 87.9 93.3 | calreticulin | HC | chr7:30565919-30560488 | 20130731
Soybean Glyma09g38410.1 638 90.2 96.1  
LJGI gnl|LJGI|TC60506 2149 99.8 99.8 similar to UniRef100_A7PV40 Cluster: Chromosome chr4 scaffold_32, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_32, whole genome shotgun sequence - Vitis vinifera (Grape), partial (90%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2839220.2 length: 420 aa.
IPR001580 Calreticulin/calnexin
method AccNumber shortName E-value location
Molecular Function GO:0005509 calcium ion binding    
Cellular Component GO:0005783 endoplasmic reticulum    
Biological Process GO:0006457 protein folding    
Molecular Function GO:0051082 unfolded protein binding    
FPrintScan PR00626 CALRETICULIN 4.8e-47 106-124
132-148
221-234
249-271
287-306
320-340
HMMPanther PTHR11073 CALRETICULIN 1.9e-201 4-419
HMMPfam PF00262 Calreticulin 3.1e-106 28-339
IPR008985 Concanavalin A-like lectin/glucanases superfamily
superfamily SSF49899 Concanavalin 0.00052 18-232
315-356
IPR009033 Calreticulin/calnexin, P domain
Molecular Function GO:0005509 calcium ion binding    
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.10.250.10 no description 0.00076 278-297
superfamily SSF63887 P-domain 2.8e-38 207-323
IPR009169 Calreticulin
Molecular Function GO:0005509 calcium ion binding    
Cellular Component GO:0005783 endoplasmic reticulum    
Biological Process GO:0006457 protein folding    
Molecular Function GO:0051082 unfolded protein binding    
HMMPIR PIRSF002356 Calreticulin 4.9e-245 8-420
IPR013320 Concanavalin A-like lectin/glucanase, subgroup
Gene3D G3DSA:2.60.120.200 no description 1.7e-96 20-244
IPR018124 Calreticulin/calnexin, conserved site
Molecular Function GO:0005509 calcium ion binding    
PatternScan PS00803 CALRETICULIN_1 NA 104-119
PatternScan PS00804 CALRETICULIN_2 NA 136-144
no_ID  
Coil coil coiled-coil NA 356-395
HMMPanther PTHR11073:SF2 CALRETICULIN 1.9e-201 4-419
Seg seg seg NA 6-19
357-418
Putative transmembrane regions
  From To
TM segments
SOSUI		 6 28
Wolf-PSORT
Lj1g3v2839220.2	cyto 3, extr 3, E.R. 3, cyto_E.R. 3, nucl 2, golg 2, E.R._vacu 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2839220.2