Miyakogusa Predicted Gene
- Lj1g3v2838130.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7KRK5_MEDTR |
243 |
80.1 |
91.5 |
(tr|G7KRK5) Uncharacterized protein OS=Medicago truncatula GN=MTR_7g080280 PE=2 SV=1 |
| TAIR_pep |
AT3G07470.1 |
169 |
51.0 |
74.8 |
| Symbols: | Protein of unknown function, DUF538 | chr3:2387291-2388343 REVERSE LENGTH=169 |
| Medicago |
Medtr7g080280.1 |
243 |
80.1 |
91.5 |
| transmembrane protein, putative | HC | chr7:30527799-30525171 | 20130731 |
| Soybean |
Glyma18g47870.1 |
240 |
70.7 |
82.9 |
|
| LJGI |
gnl|LJGI|TC69275 |
981 |
100.0 |
100.0 |
weakly similar to UniRef100_A7QYY8 Cluster: Chromosome undetermined scaffold_259, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_259, whole genome shotgun sequence - Vitis vinifera (Grape), partial (66%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v2838130.1 |
length: 164 aa. |
| IPR007493 |
Protein of unknown function DUF538 |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:2.30.240.10 |
no description |
1.1e-36 |
14-149 |
| HMMPfam |
PF04398 |
DUF538 |
3e-27 |
31-141 |
| superfamily |
SSF141562 |
At5g01610-like |
8.3e-39 |
6-151 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
3 |
24 |
- Wolf-PSORT
Lj1g3v2838130.1 extr 4, chlo 3, vacu 3, nucl 1, cyto 1, mito 1, golg 1, cyto_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v2838130.1 |
|