Miyakogusa Predicted Gene

Lj1g3v2822820.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KN57_SOYBN 852 64.7 76.9 (tr|K7KN57) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G26790.1 468 39.1 56.7 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:11425270-11427669 REVERSE LENGTH=799
Medicago Medtr3g091500.1 722 57.4 68.6 | pentatricopeptide (PPR) repeat protein | LC | chr3:41625715-41628184 | 20130731
Soybean Glyma07g34170.1 879 58.9 69.8  
LJGI gnl|LJGI|BP041405 1068 99.8 99.8 weakly similar to UniRef100_A7QFV5 Cluster: Chromosome undetermined scaffold_89, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_89, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2822820.1 length: 733 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0018 416-442
476-497
538-568
HMMPfam PF12854 PPR_1 5.5e-06 302-332
HMMPfam PF13041 PPR_2 3.3e-14 98-146
202-244
345-389
570-616
642-686
HMMTigr TIGR00756 PPR: 6.2e-06 102-134
203-237
239-271
308-341
345-377
378-411
538-572
573-607
644-677
679-712
ProfileScan PS51375 PPR 12.299 99-133
201-235
166-200
134-164
236-270
306-340
271-305
341-375
376-410
411-445
501-535
466-500
536-570
571-605
642-676
606-641
677-711
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00014 505-702
no_ID  
HMMPanther PTHR24015 FAMILY 5.5e-137 67-716
HMMPanther PTHR24015:SF0 SUBFAMILY 5.5e-137 67-716
superfamily SSF48452 TPR-like 0.00027 642-703
Wolf-PSORT
Lj1g3v2822820.1	chlo 6, mito 3, nucl 2, cyto 2, cyto_nucl 2, mito_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2822820.1