Miyakogusa Predicted Gene

Lj1g3v2809340.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL F7J695_LOTJA 1392 96.3 96.3 (tr|F7J695) Leucine-rich repeat receptor-like protein OS=Lotus japonicus GN=Clavata2 PE=2 SV=1
TAIR_pep AT1G65380.1 820 60.3 75.7 | Symbols: CLV2, AtRLP10 | Leucine-rich repeat (LRR) family protein | chr1:24286943-24289105 FORWARD LENGTH=720
Medicago Medtr7g079550.1 1156 81.1 87.1 | LRR receptor-like kinase | HC | chr7:30215711-30212614 | 20130731
Soybean Glyma09g38720.1 1196 85.6 91.0  
LJGI gnl|LJGI|DC598564 842 100.0 100.0 weakly similar to UniRef100_A7Q459 Cluster: Chromosome chr9 scaffold_49, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr9 scaffold_49, whole genome shotgun sequence - Vitis vinifera (Grape), partial (4%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2809340.1 length: 724 aa.
IPR001611 Leucine-rich repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00560 LRR_1 0.063 369-387
464-484
600-621
IPR013210 Leucine-rich repeat-containing N-terminal, type 2
HMMPfam PF08263 LRRNT_2 1.6000000000000008E-7 36-73
no_ID  
FPrintScan PR00019 LEURICHRPT 6.4000003878848584E-6 369-382
598-611
Gene3D G3DSA:3.80.10.10G3DSA:3.80.10.10 T[35-313] 3.500000000400731E-23 321-506
549-640
HMMPanther PTHR24420 PTHR24420 2.7000136937899034E-127 83-666
HMMPfam PF13855 LRR_8 4.900000000000004E-9 119-159
222-280
superfamily SSF52047 SSF52047 2.500009099161829E-62 283-636
superfamily SSF52058 SSF52058 4.399990012377245E-56 32-310
Putative transmembrane regions
  From To
TM segments
SOSUI		 11 33
689 711
Wolf-PSORT
Lj1g3v2809340.1	plas 8, golg 3, vacu 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2809340.1