Miyakogusa Predicted Gene
- Lj1g3v2741280.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1L6G7_SOYBN |
457 |
85.7 |
90.7 |
(tr|I1L6G7) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G61490.3 |
384 |
76.2 |
90.3 |
| Symbols: | Pectin lyase-like superfamily protein | chr3:22758439-22760137 FORWARD LENGTH=476 |
| Medicago |
Medtr7g078680.1 |
441 |
85.3 |
90.3 |
| polygalacturonase/glycoside hydrolase family protein | HC | chr7:29762570-29765948 | 20130731 |
| Soybean |
Glyma18g47130.1 |
467 |
86.8 |
91.9 |
|
| LJGI |
gnl|LJGI|TC57648 |
642 |
86.7 |
86.7 |
similar to UniRef100_Q84LI7 Cluster: Polygalacturonase-like protein; n=1; Fragaria x ananassa|Rep: Polygalacturonase-like protein - Fragaria ananassa (Strawberry), partial (86%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v2741280.1 |
length: 258 aa. |
| IPR000743 |
Glycoside hydrolase, family 28 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004650 |
polygalacturonase activity |
|
|
| Biological Process |
GO:0005975 |
carbohydrate metabolic process |
|
|
| HMMPfam |
PF00295 |
Glyco_hydro_28 |
1.9e-19 |
154-257 |
| IPR011050 |
Pectin lyase fold/virulence factor |
| superfamily |
SSF51126 |
Pectin |
8.6e-58 |
35-258 |
| IPR012334 |
Pectin lyase fold |
| Gene3D |
G3DSA:2.160.20.10 |
no description |
8.3e-64 |
51-258 |
| no_ID |
|
| HMMPanther |
PTHR31339 |
FAMILY |
2.3e-104 |
8-258 |
| HMMPanther |
PTHR31339:SF0 |
SUBFAMILY |
2.3e-104 |
8-258 |
| Seg |
seg |
seg |
NA |
14-26 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
6 |
27 |
- Wolf-PSORT
Lj1g3v2741280.1 chlo 5, cyto 2, plas 2, vacu 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v2741280.1 |
|