Miyakogusa Predicted Gene

Lj1g3v2682540.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL R7W1A9_AEGTA 242 91.0 94.3 (tr|R7W1A9) Ribosome biogenesis NSA2-like protein OS=Aegilops tauschii GN=F775_01883 PE=4 SV=1
TAIR_pep AT5G06360.1 226 90.6 96.6 | Symbols: | Ribosomal protein S8e family protein | chr5:1944835-1946512 FORWARD LENGTH=260
Medicago Medtr3g088865.1 235 91.8 95.1 | ribosomal protein S8e family protein | HC | chr3:40673322-40670252 | 20130731
Soybean Glyma02g35500.2 236 91.2 94.4  
LJGI gnl|LJGI|TC59973 646 98.6 98.6 similar to UniRef100_A7QHR7 Cluster: Chromosome chr8 scaffold_99, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_99, whole genome shotgun sequence - Vitis vinifera (Grape), partial (92%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2682540.1 length: 137 aa.
IPR022309 Ribosomal protein S8e/ribosomal biogenesis NSA2
method AccNumber shortName E-value location
HMMPfam PF01201 Ribosomal_S8e 1.5e-25 20-126
no_ID  
HMMPanther PTHR12642 FAMILY 6.7e-84 9-124
HMMPanther PTHR12642:SF0 SUBFAMILY 6.7e-84 9-124
Putative transmembrane regions
  From To
TM segments
SOSUI		 111 133
Wolf-PSORT
Lj1g3v2682540.1	cyto 8, chlo 2, extr 2, nucl 1.5, cysk_nucl 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2682540.1