Miyakogusa Predicted Gene

Lj1g3v2682530.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N3S1_SOYBN 1848 75.7 82.8 (tr|I1N3S1) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT2G46020.2 1492 63.4 74.6 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription regulatory protein SNF2, putative | chr2:18923304-18931769 FORWARD LENGTH=2193
Medicago Medtr7g078090.1 1808 74.2 81.9 | ATP-dependent helicase BRM | HC | chr7:29513485-29525029 | 20130731
Soybean Glyma18g46930.1 1847 75.7 82.8  
LJGI gnl|LJGI|BP043794 957 99.6 99.6 weakly similar to UniRef100_A2Q217 Cluster: HMG-I and HMG-Y, DNA-binding; Bromodomain; Helicase, C-terminal; n=1; Medicago truncatula|Rep: HMG-I and HMG-Y, DNA-binding; Bromodomain; Helicase, C-terminal - Medicago truncatula (Barrel medic), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2682530.1 length: 1204 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 1.6e-59 2-273
IPR001487 Bromodomain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.20.920.10 no description 0.00061 895-1001
HMMSmart SM00297 bromo 0.0023 893-1008
superfamily SSF47370 Bromodomain 1.4e-06 886-1011
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.7e-12 331-406
HMMSmart SM00490 helicase 6.7e-23 322-406
ProfileScan PS51194 HELICASE_CTER 17.341 296-473
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2e-08 1-150
ProfileScan PS51192 HELICASE_ATP_BIND_1 20.839 1-142
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 8e-61 198-573
1-195
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.4e-21 9-137
287-428
HMMPanther PTHR10799 SWI/SNF-RELATED 0 1-1150
HMMPanther PTHR10799:SF276SUBFAMILY NOT 0 1-1150
Seg seg seg NA 129-140
482-501
1020-1036
1157-1184
Wolf-PSORT
Lj1g3v2682530.1	nucl 10, pero 2, cyto 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2682530.1