Miyakogusa Predicted Gene

Lj1g3v2671420.4
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q2HTK9_MEDTR 261 76.7 87.4 (tr|Q2HTK9) SKP1 component OS=Medicago truncatula GN=MtrDRAFT_AC150440g26v2 PE=4 SV=2
TAIR_pep AT2G45950.1 246 73.0 84.3 | Symbols: ASK20, SK20 | SKP1-like 20 | chr2:18904611-18906967 REVERSE LENGTH=342
Medicago Medtr7g077810.1 261 76.7 87.4 | ubiquitin-protein ligase, putative | HC | chr7:29389785-29384437 | 20130731
Soybean Glyma09g39480.1 259 78.0 85.5  
LJGI gnl|LJGI|DC593786 733 100.0 100.0 similar to UniRef100_Q2HTK9 Cluster: SKP1 component; n=1; Medicago truncatula|Rep: SKP1 component - Medicago truncatula (Barrel medic), partial (41%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2671420.4 length: 159 aa.
IPR001232 SKP1 component
method AccNumber shortName E-value location
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPanther PTHR11165 SKP1 1.5e-75 11-155
HMMSmart SM00512 Found 1.1e-18 15-116
IPR011333 BTB/POZ fold
Gene3D G3DSA:3.30.710.10 no description 9.7e-32 13-156
superfamily SSF54695 POZ 2.8e-10 16-82
IPR016072 SKP1 component, dimerisation
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPfam PF01466 Skp1 2.1e-18 90-154
superfamily SSF81382 Skp1 1.8e-16 84-150
IPR016073 SKP1 component, POZ
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPfam PF03931 Skp1_POZ 2.9e-05 17-80
IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit
HMMPIR PIRSF028729 E3 3.5e-09 9-156
no_ID  
HMMPanther PTHR11165:SF22 SKP1-RELATED 1.5e-75 11-155
Wolf-PSORT
Lj1g3v2671420.4	nucl 5, cyto 4, extr 3, chlo 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2671420.4