Miyakogusa Predicted Gene

Lj1g3v2626160.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7L2J6_MEDTR 723 68.2 78.0 (tr|G7L2J6) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_7g076550 PE=4 SV=1
TAIR_pep AT1G62670.1 360 34.7 56.9 | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630
Medicago Medtr7g076550.1 723 68.2 78.0 | pentatricopeptide (PPR) repeat protein | HC | chr7:28827992-28825334 | 20130731
Soybean Glyma18g46270.2 721 70.0 80.4  
LJGI gnl|LJGI|TC82599 60.0 92.9 92.9 weakly similar to UniRef100_A7PJG0 Cluster: Chromosome chr12 scaffold_18, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_18, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2626160.2 length: 537 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.056 106-135
385-414
HMMPfam PF12854 PPR_1 2.5e-14 168-201
204-236
483-516
HMMPfam PF13041 PPR_2 5.1e-18 243-291
312-361
417-466
HMMTigr TIGR00756 PPR: 9.9e-12 141-173
175-208
210-243
245-279
280-314
315-349
350-384
420-454
456-489
491-524
ProfileScan PS51375 PPR 13.735 103-137
67-101
173-207
138-172
208-242
243-277
278-312
313-347
348-382
383-417
418-452
453-487
488-522
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3.2e-09 420-517
no_ID  
HMMPanther PTHR24015 FAMILY 3e-163 40-533
HMMPanther PTHR24015:SF0 SUBFAMILY 3e-163 40-533
Seg seg seg NA 502-517
superfamily SSF48452 TPR-like 0.00066 415-517
310-391
superfamily SSF81901 HCP-like 0.001 149-353
Wolf-PSORT
Lj1g3v2626160.2	chlo 9.5, chlo_mito 7, mito 3.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2626160.2