Miyakogusa Predicted Gene
- Lj1g3v2581040.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SXC4_LOTJA |
274 |
99.3 |
99.3 |
(tr|I3SXC4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G12390.1 |
145 |
51.5 |
70.1 |
| Symbols: | Cornichon family protein | chr1:4220347-4221481 FORWARD LENGTH=137 |
| Medicago |
Medtr7g074930.1 |
134 |
66.0 |
82.1 |
| cornichon family protein | HC | chr7:28070017-28072366 | 20130731 |
| Soybean |
Glyma09g40530.1 |
242 |
88.2 |
91.9 |
|
| LJGI |
gnl|LJGI|TC69012 |
821 |
100.0 |
100.0 |
similar to UniRef100_UPI000034F1E9 Cluster: cornichon family protein; n=1; Arabidopsis thaliana|Rep: cornichon family protein - Arabidopsis thaliana, partial (55%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v2581040.1 |
length: 136 aa. |
| IPR003377 |
Cornichon |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016020 |
membrane |
|
|
| Biological Process |
GO:0035556 |
intracellular signal transduction |
|
|
| HMMPfam |
PF03311 |
Cornichon |
1.2e-34 |
3-124 |
| no_ID |
|
| HMMPanther |
PTHR12290 |
CORNICHON-RELATED |
2.3e-48 |
1-130 |
| HMMPanther |
PTHR12290:SF5 |
CORNICHON-RELATED |
2.3e-48 |
1-130 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
7 |
29 |
| 52 |
74 |
| 111 |
133 |
- Wolf-PSORT
Lj1g3v2581040.1 vacu 7, E.R. 3, plas 2, extr 1, golg 1, nucl_plas 1, cysk_plas 1, mito_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v2581040.1 |
|