Miyakogusa Predicted Gene

Lj1g3v2580890.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N3E7_SOYBN 664 78.2 85.5 (tr|I1N3E7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G00090.1 583 68.9 78.7 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:34234-36594 FORWARD LENGTH=430
Medicago Medtr7g074890.1 653 76.9 83.5 | transducin/WD-like repeat-protein | HC | chr7:28020226-28029179 | 20130731
Soybean Glyma18g45270.1 664 78.2 85.5  
LJGI gnl|LJGI|TC72484 708 100.0 100.0 similar to UniRef100_O81310 Cluster: F6N15.8 protein; n=1; Arabidopsis thaliana|Rep: F6N15.8 protein - Arabidopsis thaliana (Mouse-ear cress), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2580890.1 length: 429 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 1.1e-07 75-109
284-316
383-421
HMMSmart SM00320 WD40 0.00038 70-109
188-224
227-266
277-316
374-422
ProfileScan PS50082 WD_REPEATS_2 15.220 77-118
284-318
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 5.5e-42 186-423
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 16.085 77-118
211-429
superfamily SSF50978 WD40 5.1e-43 28-422
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 303-317
no_ID  
HMMPanther PTHR22847 WD40 2.3e-162 67-423
HMMPanther PTHR22847:SF235WD-REPEAT PROTEIN 2.3e-162 67-423
Seg seg seg NA 3-21
40-64
132-147
Putative transmembrane regions
  From To
TM segments
SOSUI		 3 25
Wolf-PSORT
Lj1g3v2580890.1	chlo 11, mito 1, plas 1, E.R. 1, E.R._plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2580890.1