Miyakogusa Predicted Gene

Lj1g3v2570540.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T7W5_MEDTR 392 54.4 65.7 (tr|I3T7W5) Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
TAIR_pep AT1G12775.1 283 36.6 59.3 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4353906-4355840 FORWARD LENGTH=644
Medicago Medtr6g471100.1 393 51.8 66.0 | pentatricopeptide (PPR) repeat protein | LC | chr6:25449369-25454062 | 20130731
Soybean Glyma16g32030.1 384 53.5 64.5  
LJGI gnl|LJGI|FS333759 458 90.9 90.9 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2570540.1 length: 386 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.052 169-195
274-299
365-385
HMMPfam PF13041 PPR_2 4.9e-13 58-105
201-249
299-341
HMMTigr TIGR00756 PPR: 2.5e-08 63-94
95-128
169-195
204-238
239-273
274-300
299-329
330-364
ProfileScan PS51375 PPR 7.717 58-92
23-57
93-127
167-201
202-236
237-271
272-306
328-362
308-327
363-386
no_ID  
HMMPanther PTHR24015 FAMILY 6.2e-104 5-386
HMMPanther PTHR24015:SF0 SUBFAMILY 6.2e-104 5-386
Wolf-PSORT
Lj1g3v2570540.1	chlo 11.5, chlo_mito 6.83333, cyto_mito 1.33333
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2570540.1