Miyakogusa Predicted Gene

Lj1g3v2556380.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MTX7_SOYBN 696 65.2 72.9 (tr|K7MTX7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G01980.1 338 41.2 52.2 | Symbols: | RING/U-box superfamily protein | chr5:375542-377023 FORWARD LENGTH=493
Medicago Medtr7g074170.1 602 60.3 67.2 | zinc finger, C3HC4 type (RING finger) protein | HC | chr7:27708213-27711255 | 20130731
Soybean Glyma09g40770.1 689 66.4 73.6  
LJGI gnl|LJGI|TC80020 1485 100.0 100.0 similar to UniRef100_A7Q9V0 Cluster: Chromosome chr8 scaffold_68, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_68, whole genome shotgun sequence - Vitis vinifera (Grape), partial (30%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2556380.1 length: 541 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 4.7e-13 362-404
HMMSmart SM00184 Ring 4.9e-06 363-403
ProfileScan PS50089 ZF_RING_2 12.357 363-404
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 2.1e-15 360-407
no_ID  
Coil coil coiled-coil NA 214-238
HMMPanther PTHR22763 RING 5.2e-38 62-476
HMMPanther PTHR22763:SF0 SUBFAMILY 5.2e-38 62-476
Seg seg seg NA 215-242
433-453
463-472
superfamily SSF57850 RING/U-box 2.8e-19 337-410
Putative transmembrane regions
  From To
TM segments
SOSUI		 482 504
Wolf-PSORT
Lj1g3v2556380.1	nucl 7, plas 2.5, E.R._plas 2.5, E.R. 1.5, chlo 1, mito 1, vacu 1, chlo_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2556380.1