Miyakogusa Predicted Gene

Lj1g3v2297580.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KKA8_SOYBN 705 70.8 81.5 (tr|I1KKA8) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G09060.1 583 54.9 72.9 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:2766367-2768430 REVERSE LENGTH=687
Medicago Medtr7g066990.2 714 70.7 82.9 | pentatricopeptide (PPR) repeat protein | HC | chr7:24488667-24490754 | 20130731
Soybean Glyma07g17620.1 706 70.8 81.5  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2297580.1 length: 492 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00044 85-107
258-286
362-387
HMMPfam PF12854 PPR_1 5.1e-07 215-245
HMMPfam PF13041 PPR_2 6.6e-12 149-197
291-339
396-444
HMMPfam PF13812 PPR_3 0.013 116-149
HMMTigr TIGR00756 PPR: 1.8e-08 85-115
118-151
153-185
187-221
223-256
258-287
293-327
328-357
362-387
399-427
434-467
ProfileScan PS51375 PPR 5.119 79-114
115-149
150-184
185-219
256-290
220-255
291-325
326-360
361-390
396-430
431-465
466-492
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3.5e-11 13-351
no_ID  
HMMPanther PTHR24015 FAMILY 4.6e-126 5-484
HMMPanther PTHR24015:SF0 SUBFAMILY 4.6e-126 5-484
superfamily SSF81901 HCP-like 8.1e-09 185-436
Wolf-PSORT
Lj1g3v2297580.1	chlo 8, nucl 2, cyto 1, mito 1, E.R. 1, cysk 1, nucl_plas 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2297580.1