Miyakogusa Predicted Gene

Lj1g3v2295220.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KHM4_SOYBN 2106 82.3 87.1 (tr|K7KHM4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G42470.1 1637 69.8 80.9 | Symbols: | Patched family protein | chr1:15926987-15935128 FORWARD LENGTH=1272
Medicago Medtr3g115450.3 2047 83.2 87.1 | niemann-pick C1-like protein | HC | chr3:54006798-53989443 | 20130731
Soybean Glyma06g02020.1 2097 82.0 87.1  
LJGI gnl|LJGI|TC67458 2290 99.9 99.9 similar to UniRef100_A7QPC0 Cluster: Chromosome chr18 scaffold_137, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_137, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2295220.2 length: 1292 aa.
IPR000731 Sterol-sensing domain
method AccNumber shortName E-value location
Cellular Component GO:0016021 integral to membrane    
ProfileScan PS50156 SSD 40.542 630-793
IPR003392 Patched
Molecular Function GO:0008158 hedgehog receptor activity    
Cellular Component GO:0016020 membrane    
HMMPfam PF02460 Patched 1e-30 1058-1272
IPR004765 Niemann-Pick C type protein
Cellular Component GO:0016021 integral to membrane    
Biological Process GO:0030301 cholesterol transport    
HMMTigr TIGR00917 2A060601: 0 51-1273
no_ID  
Gene3D G3DSA:1.20.1640.10 no description 1.7e-21 594-803
1098-1275
HMMPanther PTHR10796 PATCHED-RELATED 0 19-1290
HMMPanther PTHR10796:SF35 NIEMANN-PICK 0 19-1290
HMMPfam PF12349 Sterol-sensing 1.8e-53 660-810
Seg seg seg NA 3-15
258-267
386-402
771-782
849-866
980-994
1251-1269
superfamily SSF82866 Multidrug 8.8e-19 1079-1274
582-796
Putative transmembrane regions
  From To
TM segments
SOSUI		 3 25
285 307
382 403
628 649
661 683
695 717
736 758
771 793
842 864
1115 1137
1145 1167
1173 1195
1211 1233
1246 1268
Wolf-PSORT
Lj1g3v2295220.2	plas 10, golg 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2295220.2