database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | K7KHM4_SOYBN | 2106 | 82.3 | 87.1 | (tr|K7KHM4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
TAIR_pep | AT1G42470.1 | 1637 | 69.8 | 80.9 | | Symbols: | Patched family protein | chr1:15926987-15935128 FORWARD LENGTH=1272 |
Medicago | Medtr3g115450.3 | 2047 | 83.2 | 87.1 | | niemann-pick C1-like protein | HC | chr3:54006798-53989443 | 20130731 |
Soybean | Glyma06g02020.1 | 2097 | 82.0 | 87.1 | |
LJGI | gnl|LJGI|TC67458 | 2290 | 99.9 | 99.9 | similar to UniRef100_A7QPC0 Cluster: Chromosome chr18 scaffold_137, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_137, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%) |
Lj1g3v2295220.2 | length: 1292 aa. | |||
IPR000731 | Sterol-sensing domain | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
Cellular Component | GO:0016021 | integral to membrane | ||
ProfileScan | PS50156 | SSD | 40.542 | 630-793 |
IPR003392 | Patched | |||
Molecular Function | GO:0008158 | hedgehog receptor activity | ||
Cellular Component | GO:0016020 | membrane | ||
HMMPfam | PF02460 | Patched | 1e-30 | 1058-1272 |
IPR004765 | Niemann-Pick C type protein | |||
Cellular Component | GO:0016021 | integral to membrane | ||
Biological Process | GO:0030301 | cholesterol transport | ||
HMMTigr | TIGR00917 | 2A060601: | 0 | 51-1273 |
no_ID | ||||
Gene3D | G3DSA:1.20.1640.10 | no description | 1.7e-21 | 594-803 1098-1275 |
HMMPanther | PTHR10796 | PATCHED-RELATED | 0 | 19-1290 |
HMMPanther | PTHR10796:SF35 | NIEMANN-PICK | 0 | 19-1290 |
HMMPfam | PF12349 | Sterol-sensing | 1.8e-53 | 660-810 |
Seg | seg | seg | NA | 3-15 258-267 386-402 771-782 849-866 980-994 1251-1269 |
superfamily | SSF82866 | Multidrug | 8.8e-19 | 1079-1274 582-796 |
From | To | |
---|---|---|
TM segments SOSUI |
3 | 25 |
285 | 307 | |
382 | 403 | |
628 | 649 | |
661 | 683 | |
695 | 717 | |
736 | 758 | |
771 | 793 | |
842 | 864 | |
1115 | 1137 | |
1145 | 1167 | |
1173 | 1195 | |
1211 | 1233 | |
1246 | 1268 |
Lj1g3v2295220.2 plas 10, golg 3
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
Lj1g3v2295220.2 |