Miyakogusa Predicted Gene

Lj1g3v2280650.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3S0D1_LOTJA 585 86.2 86.8 (tr|I3S0D1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT1G63610.2 429 76.4 89.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:23583675-23585599 REVERSE LENGTH=341

Medicago Medtr3g115240.1 500 75.6 80.3 | DUF760 family protein | HC | chr3:53877908-53882290 | 20130731

Soybean Glyma04g02000.1 526 79.3 82.4

LJGI gnl|LJGI|TC57950 1820 100.0 100.0 similar to UniRef100_A7NVT9 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (79%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v2280650.1 length: 341 aa.

IPR008479 Protein of unknown function DUF760

method AccNumber shortName E-value location

HMMPfam PF05542 DUF760 8.2e-20 90-171
242-326

no_ID

Coil coil coiled-coil NA 212-240

Seg seg seg NA 19-47
219-229

Wolf-PSORT

Lj1g3v2280650.1 chlo 8, mito 3, nucl 2, mito_plas 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v2280650.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3S0D1_LOTJA	585	86.2	86.8	(tr\|I3S0D1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT1G63610.2	429	76.4	89.1	\| Symbols: \| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr1:23583675-23585599 REVERSE LENGTH=341
Medicago	Medtr3g115240.1	500	75.6	80.3	\| DUF760 family protein \| HC \| chr3:53877908-53882290 \| 20130731
Soybean	Glyma04g02000.1	526	79.3	82.4
LJGI	gnl\|LJGI\|TC57950	1820	100.0	100.0	similar to UniRef100_A7NVT9 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (79%)

IPR008479	Protein of unknown function DUF760
Lj1g3v2280650.1				length: 341 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF05542	DUF760	8.2e-20	90-171 242-326
no_ID
Coil	coil	coiled-coil	NA	212-240
Seg	seg	seg	NA	19-47 219-229