Miyakogusa Predicted Gene
- Lj1g3v2264760.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7J5X3_MEDTR |
248 |
88.1 |
93.3 |
(tr|G7J5X3) Hippocampus abundant transcript-like protein OS=Medicago truncatula GN=MTR_3g114810 PE=4 SV=1 |
| TAIR_pep |
AT5G42210.1 |
185 |
65.4 |
80.5 |
| Symbols: | Major facilitator superfamily protein | chr5:16867865-16870568 FORWARD LENGTH=282 |
| Medicago |
Medtr3g114810.1 |
248 |
88.1 |
93.3 |
| MFS transporter | HC | chr3:53598748-53604770 | 20130731 |
| Soybean |
Glyma06g02320.1 |
243 |
83.7 |
94.1 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v2264760.1 |
length: 135 aa. |
| IPR016196 |
Major facilitator superfamily domain, general substrate transporter |
| method |
AccNumber |
shortName |
E-value |
location |
| superfamily |
SSF103473 |
MFS |
1.8e-07 |
1-133 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1250.20 |
no description |
1.1e-07 |
10-119 |
| HMMPanther |
PTHR24526 |
FAMILY |
4e-40 |
1-130 |
| HMMPanther |
PTHR24526:SF29 |
SUBFAMILY |
4e-40 |
1-130 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
6 |
28 |
| 35 |
57 |
| 74 |
96 |
| 108 |
130 |
- Wolf-PSORT
Lj1g3v2264760.1 extr 4, golg 3, E.R. 2, golg_plas 2, chlo 1, cyto 1, mito 1, plas 1, vacu 1, chlo_mito 1, mito_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v2264760.1 |
|