Miyakogusa Predicted Gene

Lj1g3v2251620.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J5W4_MEDTR 854 77.3 85.8 (tr|G7J5W4) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_3g114700 PE=4 SV=1
TAIR_pep AT1G20300.1 719 64.4 78.0 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:7029701-7031314 FORWARD LENGTH=537
Medicago Medtr3g114700.1 854 77.3 85.8 | PPR containing plant-like protein | HC | chr3:53562677-53565345 | 20130731
Soybean Glyma06g02350.1 690 84.5 91.6  
LJGI gnl|LJGI|AV415701 357 100.0 100.0 similar to UniRef100_A7NVN5 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2251620.1 length: 509 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 1.3e-07 298-328
HMMPfam PF13041 PPR_2 2.1e-12 160-205
225-274
331-377
400-449
HMMTigr TIGR00756 PPR: 0.00033 160-192
229-262
263-297
298-331
335-366
369-402
404-437
439-472
ProfileScan PS51375 PPR 8.024 157-191
122-156
226-260
192-222
261-295
296-330
331-365
366-400
401-435
436-471
472-506
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 7.6e-07 173-361
no_ID  
HMMPanther PTHR24015 FAMILY 1.2e-128 67-508
HMMPanther PTHR24015:SF0 SUBFAMILY 1.2e-128 67-508
Wolf-PSORT
Lj1g3v2251620.1	chlo 8, mito 3, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2251620.1