Miyakogusa Predicted Gene

Lj1g3v2251580.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JSZ4_SOYBN 427 73.9 81.5 (tr|I1JSZ4) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT1G76050.1 318 68.4 81.0 | Symbols: | Pseudouridine synthase family protein | chr1:28540858-28542019 FORWARD LENGTH=313
Medicago Medtr3g114540.2 409 72.5 79.2 | RNA pseudouridine synthase, putative | HC | chr3:53482122-53487173 | 20130731
Soybean Glyma04g02320.1 427 73.9 81.5  
LJGI gnl|LJGI|GO008096 1265 99.4 99.4 similar to UniRef100_Q9LQR4 Cluster: T4O12.25; n=1; Arabidopsis thaliana|Rep: T4O12.25 - Arabidopsis thaliana (Mouse-ear cress), partial (11%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2251580.1 length: 294 aa.
IPR002942 RNA-binding S4 domain
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Gene3D G3DSA:3.10.290.10 no description 2.4e-13 83-131
HMMPfam PF01479 S4 5e-10 83-129
HMMSmart SM00363 S4 1.5e-09 82-147
ProfileScan PS50889 S4 12.970 82-155
IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
HMMPfam PF00849 PseudoU_synth_2 6.4e-18 156-288
IPR006224 Pseudouridine synthase, RluC/RluD, conserved site
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
PatternScan PS01129 PSI_RLU NA 231-245
IPR020103 Pseudouridine synthase, catalytic domain
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
superfamily SSF55120 Pseudouridine 2.2e-31 139-294
no_ID  
HMMPanther PTHR10436 RNA 1.3e-70 83-293
HMMPanther PTHR10436:SF39 PSEUDOURIDINE 1.3e-70 83-293
Seg seg seg NA 35-46
superfamily SSF55174 Alpha-L 9e-12 81-139
Wolf-PSORT
Lj1g3v2251580.1	chlo 11, mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2251580.1