Miyakogusa Predicted Gene

Lj1g3v2184140.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL D7KI81_ARALL 119 80.0 92.3 (tr|D7KI81) Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_312926 PE=4 SV=1

TAIR_pep AT1G19990.1 104 75.0 90.0 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192 proteins in 541 species: Archae - 6; Bacteria - 629; Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes - 4392 (source: NCBI BLink). | chr1:6935327-6936665 FORWARD LENGTH=251

Medicago Medtr3g110202.1 101 70.3 84.4 | hypothetical protein | HC | chr3:51215510-51217962 | 20130731

Soybean Glyma04g02630.1 107 51.8 60.4

LJGI gnl|LJGI|TC78110 416 97.0 97.0

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v2184140.1 length: 231 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 59-80

Seg seg seg NA 53-83
156-182
193-215

Wolf-PSORT

Lj1g3v2184140.1 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v2184140.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	D7KI81_ARALL	119	80.0	92.3	(tr\|D7KI81) Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_312926 PE=4 SV=1
TAIR_pep	AT1G19990.1	104	75.0	90.0	\| Symbols: \| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192 proteins in 541 species: Archae - 6; Bacteria - 629; Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes - 4392 (source: NCBI BLink). \| chr1:6935327-6936665 FORWARD LENGTH=251
Medicago	Medtr3g110202.1	101	70.3	84.4	\| hypothetical protein \| HC \| chr3:51215510-51217962 \| 20130731
Soybean	Glyma04g02630.1	107	51.8	60.4
LJGI	gnl\|LJGI\|TC78110	416	97.0	97.0

no_ID
Lj1g3v2184140.1				length: 231 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	59-80
Seg	seg	seg	NA	53-83 156-182 193-215