Miyakogusa Predicted Gene
- Lj1g3v2157680.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6TFQ6_SOYBN |
226 |
76.9 |
84.6 |
(tr|C6TFQ6) Putative uncharacterized protein OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT4G10360.2 |
130 |
49.6 |
69.8 |
| Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr4:6420679-6422108 FORWARD LENGTH=266 |
| Medicago |
Medtr3g063070.1 |
182 |
64.3 |
75.5 |
| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein | HC | chr3:28547655-28542831 | 20130731 |
| Soybean |
Glyma11g31750.1 |
226 |
76.9 |
84.6 |
|
| LJGI |
gnl|LJGI|TC59271 |
833 |
99.5 |
99.5 |
similar to UniRef100_A7NXX3 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (88%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v2157680.2 |
length: 143 aa. |
| IPR006634 |
TRAM/LAG1/CLN8 homology domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPfam |
PF03798 |
TRAM_LAG1_CLN8 |
8.1e-07 |
67-133 |
| ProfileScan |
PS50922 |
TLC |
10.577 |
63-143 |
| no_ID |
|
| HMMPanther |
PTHR13439 |
CT120 |
1e-22 |
26-142 |
| HMMPanther |
PTHR13439:SF0 |
SUBFAMILY |
1e-22 |
26-142 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
1 |
23 |
| 31 |
53 |
| 73 |
95 |
| 111 |
133 |
- Wolf-PSORT
Lj1g3v2157680.2 vacu 5, extr 3, chlo 2, nucl 1, cyto 1, plas 1, golg 1, cyto_nucl 1, chlo_mito 1, nucl_plas 1, golg_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v2157680.2 |
|