Miyakogusa Predicted Gene
- Lj1g3v2157640.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7KA43_MEDTR |
91.3 |
64.1 |
71.9 |
(tr|G7KA43) F-box protein SKIP19 OS=Medicago truncatula GN=MTR_5g062080 PE=4 SV=1 |
| TAIR_pep |
AT4G05460.1 |
66.6 |
54.9 |
70.6 |
| Symbols: | RNI-like superfamily protein | chr4:2761106-2762400 REVERSE LENGTH=302 |
| Medicago |
Medtr3g067615.1 |
92.4 |
73.1 |
80.8 |
| F-box/LRR protein | LC | chr3:30201111-30203392 | 20130731 |
| Soybean |
Glyma15g09890.1 |
67.8 |
54.0 |
70.0 |
|
| LJGI |
gnl|LJGI|TC82289 |
85.7 |
83.0 |
83.0 |
weakly similar to UniRef100_Q2HSK3 Cluster: Cyclin-like F-box; n=1; Medicago truncatula|Rep: Cyclin-like F-box - Medicago truncatula (Barrel medic), partial (50%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v2157640.1 |
length: 82 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
1.7e-07 |
15-61 |
| superfamily |
SSF81383 |
F-box |
8.1e-09 |
17-74 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
2e-10 |
15-61 |
- Wolf-PSORT
Lj1g3v2157640.1 cyto 9, extr 2, plas 1, cysk 1, golg 1, golg_plas 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v2157640.1 |
Not targeted |
-52.015 |
0 |
-10.488 |
77.93% |
-41.527
|